PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0017s01160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 120aa    MW: 13402.1 Da    PI: 9.0248
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0017s01160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-4228120193
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk++rrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+  +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql++e
  Vang0017s01160.1  28 PCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTE 120
                       7****************************************************************************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.94527120IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-4328120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
LDLSNKPSDL XLSVRRIMSS SLSSSNSPCA ACKIQRRKCT QECVFAPYFP PDNPQRFAYV  60
HKVFGASNVA KLLNELNAAQ REDAVKSLAY EAEARLRDPV YGCVGLISIL QHRLKQLQTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-180AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136211.12e-71hypothetical protein PHAVU_009G027700g
SwissprotQ9FKZ38e-57LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0L9UG233e-71A0A0L9UG23_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RCY21e-71A0A0S3RCY2_PHAAN; Uncharacterized protein
TrEMBLV7ASD72e-71V7ASD7_PHAVU; Uncharacterized protein
STRINGGLYMA04G11991.17e-67(Glycine max)
STRINGGLYMA06G11181.19e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-55ASYMMETRIC LEAVES 2-like 1